rs217206429 SNP Detail

Summary

• ID
  rs217206429
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151858135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGCTTGC TTGAGTCAGG
  CTCTCTTTTT GCTCACTGCT GTGTTCACCG GGACAACAGG CTCTAACGCT TCCAGGGATT
  CTCCTGTCTC TTTCCACAGA CGCACGGAGA TTATAGGCAC GCTATCTACC CAGCTTTATG
  TGAGTCCTGG AAATCTAAAC TTGGGGCCTC TCACTGAGAC ACCACTGCTT TACCTGATGA
  R
  CCATCTCCCA GGCCTAGAAA GGAGCCACTG GGTCTAGGGT AGTTCATCCC AGCCACCCAG
  ACAGTTTGGC CCAGGCTACC TGAGTGTCTC TATCTCTTGT ATAGCATACC TACTGCAGGC
  TGCAGATAGC TGGAGAAGTG AGGAGAAGTG AGGGCTGGCC ATCTAATCAG CTCCTTCAGG
  CTAAGCCCAA CACTGCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028254	CHEV_3_151815462	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217206429					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151858135 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm16198	predicted gene 16198			949 bp upstream
Gm64753	predicted gene, 64753			within coordinates
Rr587469	regulatory region 587469			173 bp distal
Rr587470	regulatory region 587470			within coordinates