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rs217206429 SNP Detail
Summary
  • ID
    rs217206429
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:151858135 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCTTGCTTGC TTGAGTCAGG
    CTCTCTTTTT GCTCACTGCT GTGTTCACCG GGACAACAGG CTCTAACGCT TCCAGGGATT
    CTCCTGTCTC TTTCCACAGA CGCACGGAGA TTATAGGCAC GCTATCTACC CAGCTTTATG
    TGAGTCCTGG AAATCTAAAC TTGGGGCCTC TCACTGAGAC ACCACTGCTT TACCTGATGA
    R
    CCATCTCCCA GGCCTAGAAA GGAGCCACTG GGTCTAGGGT AGTTCATCCC AGCCACCCAG
    ACAGTTTGGC CCAGGCTACC TGAGTGTCTC TATCTCTTGT ATAGCATACC TACTGCAGGC
    TGCAGATAGC TGGAGAAGTG AGGAGAAGTG AGGGCTGGCC ATCTAATCAG CTCCTTCAGG
    CTAAGCCCAA CACTGCTCTC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss321028254 CHEV_3_151815462 CHEVERUD SCREENING_POP f SNP A G
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs217206429 SNP A G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:151858135 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gipc2 GIPC PDZ domain containing family, member 2 Intron
Noncoding-Transcript-Variant
Gm16198 predicted gene 16198 949 bp upstream
Gm64753 predicted gene, 64753 within coordinates
Rr587469 regulatory region 587469 173 bp distal
Rr587470 regulatory region 587470 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory