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rs217223983 SNP Detail
Summary
  • ID
    rs217223983
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr14:103269738 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGATACAGTG AGGGAACATT
    GGCATCACCA AAGCAGGAAA TTCATTTAAA GAACTAAATA GCAGAATGGA CACAGTGAAG
    TGATTAGACC ATGAAGCCAT CCAATCCTAT CAGGATACTG AACAGACTCA ACTGTAGAGT
    TGAGGAGGAT GAGCACCTAG CCATACAATC TCGCTCATGT GTGCAGAGAG AAATAGATGA
    S
    AAACTAAATC TATAAACAGT ACAAGAAATT TCCTTGAAAC TCAATGAAGA AACTTTTGGT
    GAAGGAAAAG GACTTGACTT TTTAAAAAGT TGACGATGTG ATGTGGCAAT GTCAAAAGGA
    TGAACCCTGA CCTTCCTTTG AGGATCCCTA CCAATATTCC GCATGAGCTA CACTACCATT
    GTAAGTTTAC ATACAGCTCA                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
KK/HlJ
LEWES/EiJ
LG/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss392295478 MGP_WTSI_14_103431519 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C G C C G C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
KK/HlJ
LEWES/EiJ
LG/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217223983 SNP C C C C C C C C C C C C C C C C C C C G C C G C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss392295478 MGP_WTSI_14_103431519 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:103269738 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
4933432I03Rik RIKEN cDNA 4933432I03 gene within coordinates
Rr404263 regulatory region 404263 1110 bp upstream
Rr404264 regulatory region 404264 1829 bp upstream
Rr496958 regulatory region 496958 837 bp proximal
Rr496959 regulatory region 496959 1210 bp proximal
Rr496960 regulatory region 496960 1873 bp proximal
Tssr4511 transcription start site region 4511 1419 bp upstream
Tssr126967 transcription start site region 126967 1451 bp upstream
Tssr126968 transcription start site region 126968 1536 bp upstream
Tssr130069 transcription start site region 130069 1188 bp downstream
Tssr130070 transcription start site region 130070 1214 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory