rs217229819 SNP Detail

Summary

• ID
  rs217229819
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135809442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTATACAT AGTTCAGTGG
  TAAACACATG TGAGGCATGC ACAAAGCTCT GGGTGCTCAG ATACAAAGAT GAATGGGAAG
  TCTGGGGTGG GTCACAGACG AGTTAACCTG AACAGTAGAG TAGGGTTAGC TCAGCAGAGA
  TGGTGAATAA TAGTGTGGTT AAGTGCCGTG TGGGGGTGGG GGGGGGTGTG TGTGGAGGAT
  S
  GAACTCGGGC CATACTCATG CTAAGCGAAT ATTGTGCCAC TGAGGAAGGA AGTTGAGATC
  TTTTTAGTTG GGGGAAGGGC CGTGTGGGTC TGTGCGTGTG CACATCACAG CACAGTAGCA
  TGCAGAGGAC AACTTGCTGG AGTCTGTTTT TTCATCGTGT GGGAAAGATT CGAGATTGAA
  CTCATGTCCT TGAGCTTTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366842249	MGP_WTSI_5_136256458	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217229819					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366842249	MGP_WTSI_5_136256458	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135809442 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	1241 bp distal
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	within coordinates
Rr367967	regulatory region 367967	1941 bp downstream
Rr622432	regulatory region 622432	1133 bp distal
Rr622433	regulatory region 622433	within coordinates
Tssr49188	transcription start site region 49188	1943 bp downstream
Tssr49189	transcription start site region 49189	1925 bp downstream
Tssr49190	transcription start site region 49190	1899 bp downstream
Tssr49191	transcription start site region 49191	1876 bp downstream