rs217238962 SNP Detail

Summary

• ID
  rs217238962
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99506906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTTTCCT CAAGAAAGAC
  TTGAGGACCA GACAGATGGC TCAAGGCTTA CAAGCCGAGT TTGGTCCCTG GATCCTGCAC
  AAAGCCAGTT CCAGTCCAGG CCAGCTTAGC TACACAGCAA GACCCTGTCT CAAACTTGAC
  TCTAAGGACC CTCCAAAAGA CAAGGGGAAC TGGGGACGTG GGTCAGTGGT GGAGTGCTGC
  Y
  TACCATGTAG GAAGCTACAC AAATGCGGGA TGATCAGGCA TCCATCTCTT AAGCCCTAGC
  CATCTGTTCC ACACAGAGGA GTAATAGAGC ATTTCGATTA AAATGTTTCA AGAAAAGTGG
  TTTACTATAT GAAAGCACCA TGCTTCACCC TCATCACATC AGCTGGGAAG GACAACCCTG
  GAAGGGGGCC AGAAGGTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372505090	MGP_WTSI_7_107006209	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217238962					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372505090	MGP_WTSI_7_107006209	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99506906 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19472	CpG island 19472	809 bp proximal
Rr400465	regulatory region 400465	1129 bp upstream
Rr652012	regulatory region 652012	1190 bp proximal
Spcs2	signal peptidase complex subunit 2 homolog (S. cerevisiae)	within coordinates
Tssr68077	transcription start site region 68077	1360 bp upstream
Tssr68078	transcription start site region 68078	1424 bp upstream
Tssr73711	transcription start site region 73711	601 bp downstream
Tssr73712	transcription start site region 73712	1173 bp downstream
Tssr73713	transcription start site region 73713	1211 bp downstream
Tssr73714	transcription start site region 73714	1293 bp downstream
Xrra1	X-ray radiation resistance associated 1	1519 bp upstream