rs217256226 SNP Detail

Summary

• ID
  rs217256226
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43059337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCCAACC CTTAGGAGGG
  AGAGAAGCAA GACGATCAGG AGTTCGAGGT TATCCTTGGC TATGTAACAT ATATACATGA
  TAGAATCCAT GATCTTGTAT AAATGGAGCA AAGGTTGCTG GGGAGATGAG TAGGCTGATA
  AAGAGTTTGA CACACAGCCA GGCGCGGTGG TGCACACCTT TAGTCCCAGC ACTTGGGAGG
  M
  AGAGGCAGGC GAATTTCTGA GTTTGAGGCC ATCCTGGTCT ACAGAGTGAG TGCCAGGTCA
  GCCAGGGCTA CACAGAGAAA CCCTGTCTCA AAAAAAAAAA AAAAAAAAAA AAAAAAAAGA
  GTTTGACACA CGAGTGTGGA GAATGGGATT TGAACCCTCA GAGCATGCAT AAAAGCGAGT
  CAGGCATGGT AGCCCCACTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371130987	MGP_WTSI_7_50665283	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	C	A	A	A	A	A	A	A	A	C	C	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217256226					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	C	A	A	A	A	A	A	A	A	C	C	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371130987	MGP_WTSI_7_50665283	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43059337 () rs orientation: forward

Symbol	Name	Function Class
Rr645953	regulatory region 645953	1699 bp distal
Rr645954	regulatory region 645954	1339 bp distal
Siglecg	sialic acid binding Ig-like lectin G	within coordinates
Tssr65984	transcription start site region 65984	1702 bp downstream
Tssr65985	transcription start site region 65985	1693 bp downstream
Tssr65986	transcription start site region 65986	1657 bp downstream
Tssr65987	transcription start site region 65987	1640 bp downstream
Tssr65988	transcription start site region 65988	1628 bp downstream
Tssr65989	transcription start site region 65989	1395 bp downstream
Tssr65990	transcription start site region 65990	1374 bp downstream
Tssr65991	transcription start site region 65991	651 bp downstream
Tssr65992	transcription start site region 65992	640 bp downstream
Tssr65993	transcription start site region 65993	612 bp downstream
Tssr65994	transcription start site region 65994	493 bp downstream