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rs217261942 SNP Detail
Summary
  • ID
    rs217261942
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:48043328 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGGGCTCCAG TCTAAAGGAA
ACACAGACTG TCCTCAGGAA CCCCAGTCAG AGATACAGAG CGTCTGTCTT CAGGAAGCCT
CCGTTGCAAA ATGAGGGGAG GAGGTGTTTT CCTCTGAAAA TGGCTAACCG ACCATGGGAA
TTGGCTGTTC ACCCAGACTC TTCTTCCTTT GGTCCTCTGT AGCCAGCAGG GGTCTAACGG
Y
GGGCAGATTG TGTTCGGTGG CGTGGACGAG AACCTGTACA CTGGCGAGCT CACCTGGATT
CCTGTCACCC AGGAGCTTTA CTGGCAGATC ACCATTGACG AGTGAGTCTG GTCGGGCCTC
AGACATTCTA AGCCATCCAC CCACCCATCC CGGCACTGCT GGTAGAGGGT GGGTGGGAGA
CCCTCCTCCA AAGTCATAGG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss398353017 MGP_WTSI_17_47869352 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217261942 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss398353017 MGP_WTSI_17_47869352 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:48043328 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Pgc progastricsin (pepsinogen C) within coordinates
Rr528106 regulatory region 528106 1673 bp distal
Tssr5149 transcription start site region 5149 915 bp downstream
Tssr145017 transcription start site region 145017 1798 bp downstream
Tssr145018 transcription start site region 145018 1792 bp downstream
Tssr145019 transcription start site region 145019 1761 bp downstream
Tssr145020 transcription start site region 145020 1732 bp downstream
Tssr145021 transcription start site region 145021 1702 bp downstream
Tssr145022 transcription start site region 145022 1675 bp downstream
Tssr145023 transcription start site region 145023 1637 bp downstream
Tssr145024 transcription start site region 145024 1535 bp downstream
Tssr145025 transcription start site region 145025 1172 bp downstream
Tssr145026 transcription start site region 145026 932 bp downstream
Tssr145027 transcription start site region 145027 within coordinates
Tssr145028 transcription start site region 145028 16 bp upstream
Tssr145029 transcription start site region 145029 57 bp upstream
Tssr145030 transcription start site region 145030 551 bp upstream
Tssr145031 transcription start site region 145031 567 bp upstream
Tssr145032 transcription start site region 145032 575 bp upstream
Tssr145033 transcription start site region 145033 656 bp upstream
Tssr145034 transcription start site region 145034 658 bp upstream
Tssr145035 transcription start site region 145035 1348 bp upstream
Tssr145036 transcription start site region 145036 1356 bp upstream
Tssr145037 transcription start site region 145037 1400 bp upstream
Tssr145038 transcription start site region 145038 1410 bp upstream
Tssr145039 transcription start site region 145039 1775 bp upstream
Tssr145040 transcription start site region 145040 1799 bp upstream
Tssr145041 transcription start site region 145041 1836 bp upstream
Tssr145042 transcription start site region 145042 1854 bp upstream
Tssr145043 transcription start site region 145043 1909 bp upstream
Tssr145044 transcription start site region 145044 1926 bp upstream
Tssr145045 transcription start site region 145045 1936 bp upstream
Tssr145046 transcription start site region 145046 1955 bp upstream
Tssr148467 transcription start site region 148467 1771 bp upstream
Tssr148468 transcription start site region 148468 1734 bp upstream
Tssr148469 transcription start site region 148469 1640 bp upstream
Tssr148470 transcription start site region 148470 24 bp downstream
Tssr148471 transcription start site region 148471 43 bp downstream
Tssr148472 transcription start site region 148472 59 bp downstream
Tssr148473 transcription start site region 148473 76 bp downstream
Tssr148474 transcription start site region 148474 95 bp downstream
Tssr148475 transcription start site region 148475 624 bp downstream
Tssr148476 transcription start site region 148476 652 bp downstream
Tssr148477 transcription start site region 148477 683 bp downstream
Tssr148478 transcription start site region 148478 1395 bp downstream
Tssr148479 transcription start site region 148479 1433 bp downstream
Tssr148480 transcription start site region 148480 1911 bp downstream
Tssr148481 transcription start site region 148481 1941 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory