rs217267171 SNP Detail

Summary

• ID
  rs217267171
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141547059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGAGTC TGGCGTGGGC
  AGTGGCTGCC ATTTTCTTTT GTTGGAGAAG GATGAGGCAG AAAAGACTCG GAAGGAGAGT
  TTCTGGTTTC TTCCAGGCTC CACACGGCCT TGATCTAGAA TGTTCCTGAC ATCTAGCTAT
  GTGTCTGCCC TTGGCTTAGA ATTCCTCTTT TTGCGGGGCT AGTTCCACAG GTTTCTCTTA
  Y
  TTTCCTATGA GAAAGAGCTG TCGAGAGCTG GAAAAATACT CCGGGGTCAG GGTAGTTTTC
  CTCATGACCC AAGTGACATT GTCTACATCA CTGCCATGGT TGGCCAGGAT AAACGTCATT
  TAATTCTGTG TGTGTGTGTG TGTGTGTGTA TGTGGATGTC AGAAGTCAAC CTGTAGTGCA
  CTGGTTCTCA ACCTTCCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321390085	CHEV_4_141375663	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217267171					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141547059 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	671 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	103 bp proximal
Gm56298	predicted gene, 56298	within coordinates
Tssr40105	transcription start site region 40105	1849 bp downstream
Tssr40106	transcription start site region 40106	1818 bp downstream
Tssr40107	transcription start site region 40107	1766 bp downstream
Tssr40108	transcription start site region 40108	704 bp downstream
Tssr40109	transcription start site region 40109	669 bp downstream
Tssr40110	transcription start site region 40110	646 bp downstream
Tssr40111	transcription start site region 40111	1577 bp upstream
Tssr40112	transcription start site region 40112	1605 bp upstream
Tssr40113	transcription start site region 40113	1634 bp upstream
Tssr40114	transcription start site region 40114	1956 bp upstream
Tssr40115	transcription start site region 40115	1990 bp upstream
Tssr44369	transcription start site region 44369	1851 bp upstream
Tssr44370	transcription start site region 44370	1811 bp upstream
Tssr44371	transcription start site region 44371	1780 bp upstream
Tssr44372	transcription start site region 44372	1749 bp upstream
Tssr44373	transcription start site region 44373	1462 bp upstream
Tssr44374	transcription start site region 44374	616 bp upstream
Tssr44375	transcription start site region 44375	383 bp upstream
Tssr44376	transcription start site region 44376	365 bp upstream
Tssr44377	transcription start site region 44377	236 bp downstream
Tssr44378	transcription start site region 44378	355 bp downstream
Tssr44379	transcription start site region 44379	1604 bp downstream
Tssr44380	transcription start site region 44380	1616 bp downstream
Tssr44381	transcription start site region 44381	1972 bp downstream
Tssr44382	transcription start site region 44382	1991 bp downstream