rs217267775 SNP Detail

Summary

• ID
  rs217267775
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:93869797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGATACA CCTATAATAC
  CAGGAGGCTA AGATGGGAGA GTTCAAAGTT CAAGACCAGC TTGGATTCCA TACTAAGACC
  CTTTCTATCT CCGAAAAGAA AAGGGAGTGG ATGAGTGGGA ACAAGATTAA TGACAAAGTT
  AAATTTACAT AAAAATAGAT TCAAAACTCT GTGGTACATC TTTCACACTA GAAAACCAAA
  M
  CAAACCAAAA CAAAACCCCA TGCAAACATA GTCACACATT TGAAACTTCC AAGATCTTTT
  TTTTTTTTGC TTTTATCTTT TGTAACAAAA TGTTTTCTAA GATAGGGTCT CTCCTATCTC
  ACCCTAGTCT CTAACTCACT AAGTAGCTGA TACTTTGAAG TTCTTATGAT GCTCTTAAAA
  GCACCTTTTG AGTGCTGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	SPRET/EiJ
ss381314802	MGP_WTSI_10_93496680	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	SPRET/EiJ
rs217267775					SNP	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381314802	MGP_WTSI_10_93496680	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93869797 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2121	CpG island 2121	1371 bp proximal
Gm49628	predicted gene, 49628	77 bp downstream
Rr402165	regulatory region 402165	1780 bp upstream
Rr437370	regulatory region 437370	803 bp proximal
Rr437371	regulatory region 437371	1760 bp proximal
Tssr95293	transcription start site region 95293	1514 bp upstream
Tssr98985	transcription start site region 98985	1793 bp downstream
Tssr98986	transcription start site region 98986	1836 bp downstream
Tssr98987	transcription start site region 98987	1854 bp downstream
Vezt	vezatin, adherens junctions transmembrane protein	within coordinates