rs217276495 SNP Detail

Summary

• ID
  rs217276495
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96142745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAGCCAT TTATCATTTA
  TTTAAAATTC ATCCTTTATA GTCAGGATTT GAGAATCAAC ATAACAAAAA TGAGTATACA
  TTTTTGTTAA AGAGTTTTTT AAAAGGAAAC CTTAAAAGTT GTGTAATGAA AACAGTTTTA
  GTGCATTTAA GTTATAGGAA ATAGAACATT ATGTTAGATT TAACTCTTAA AACCAAAAGT
  S
  AAATAAAATA TATAGAAAAT GCTTAGTTGC AGAAGTTTGT AATTGCAAAA AGGCTTCGAA
  TGGAGTAGAG AACCCCAGTT GTGCATGTTG ATAGGCCATT TCTACAGGAA ACATGAGACC
  TACACCAGAG ACTCTCTGGA TGAAAAATAT GGGAGACATG TTTGGATAAT TGAAGTGATA
  TGTTTCACTT TGTCTGAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323107373	CHEV_9_96161111	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217276495					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96142745 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	1458 bp downstream
Tssr86589	transcription start site region 86589	1981 bp downstream
Tssr86590	transcription start site region 86590	1966 bp downstream
Tssr86591	transcription start site region 86591	1907 bp downstream
Tssr86592	transcription start site region 86592	1890 bp downstream
Tssr86593	transcription start site region 86593	1862 bp downstream
Tssr86594	transcription start site region 86594	1679 bp downstream
Tssr86595	transcription start site region 86595	1431 bp downstream
Tssr86596	transcription start site region 86596	1415 bp downstream