rs217286944 SNP Detail

Summary

• ID
  rs217286944
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140428040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGATCGTGC ACGTGGCTTG
  TCGGGTCCTG TGAGGGGGGC CCTGTCGACT CCTCAGCCTT GACCCCAGCA CCTCTGGCCA
  CTTCTCTTCC CGGATTCCTA GACCCTGCAC TGTCCCACGG GGTAGGGGAA AGGTTTCCTC
  TCCCACTTCT GCCAGGTCAG ATTCTTTACA ATTTTAAAAC TCAGCTCTCC CAGGGAACGC
  M
  TTCCTTGATC CTGGAACCCG GTAAGTACCA TGCTTTCAGT AATTTCTTAA TCTTTCCTCT
  TACTTCGCCT TCCAACTGGG CAGAGATCTT GTTCTCCAGG TCTGTATTCT AAGCTTCTAG
  CACCTTTGCA TCTAGTCTTG CTTGTACTGA GGCGCGGTAA ATACGTTTTT AAAATGAAGA
  AAATTCCCAT CACAAGTACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363501318	MGP_WTSI_4_140256644	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	A	A	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217286944					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	A	A	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363501318	MGP_WTSI_4_140256644	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140428040 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15194	CpG island 15194	750 bp distal
Cpgi15195	CpG island 15195	336 bp proximal
Gm69527	predicted gene, 69527	within coordinates
Gm69529	predicted gene, 69529	259 bp downstream
Rcc2	regulator of chromosome condensation 2	within coordinates
Rr377298	regulatory region 377298	within coordinates
Rr603517	regulatory region 603517	846 bp distal
Rr603518	regulatory region 603518	178 bp distal
Rr603519	regulatory region 603519	within coordinates
Rr603520	regulatory region 603520	531 bp proximal
Rr603521	regulatory region 603521	681 bp proximal
Tssr39970	transcription start site region 39970	847 bp downstream
Tssr39971	transcription start site region 39971	774 bp downstream
Tssr39972	transcription start site region 39972	754 bp downstream
Tssr39973	transcription start site region 39973	731 bp downstream
Tssr39974	transcription start site region 39974	383 bp downstream
Tssr39975	transcription start site region 39975	244 bp downstream
Tssr39976	transcription start site region 39976	200 bp downstream
Tssr39977	transcription start site region 39977	116 bp downstream
Tssr39978	transcription start site region 39978	697 bp upstream
Tssr39979	transcription start site region 39979	718 bp upstream
Tssr39980	transcription start site region 39980	737 bp upstream
Tssr39981	transcription start site region 39981	781 bp upstream
Tssr39982	transcription start site region 39982	793 bp upstream
Tssr39983	transcription start site region 39983	879 bp upstream
Tssr39984	transcription start site region 39984	1104 bp upstream
Tssr39985	transcription start site region 39985	1166 bp upstream
Tssr39986	transcription start site region 39986	1207 bp upstream
Tssr39987	transcription start site region 39987	1352 bp upstream
Tssr39988	transcription start site region 39988	1448 bp upstream
Tssr39989	transcription start site region 39989	1487 bp upstream
Tssr44270	transcription start site region 44270	1079 bp upstream
Tssr44271	transcription start site region 44271	1046 bp upstream
Tssr44272	transcription start site region 44272	906 bp upstream
Tssr44273	transcription start site region 44273	340 bp downstream
Tssr44274	transcription start site region 44274	1669 bp downstream