rs217287087 SNP Detail

Summary

• ID
  rs217287087
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64302540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAAAGCAG CCAATAGTGT
  GACCTTATTT TTAGCCACAT CTTTATTTTG GGTAAATAAA CTATACCTAG CAAGATACCG
  AAGTCAAATT TGACTTTATG GAGAGAAAGT AACTTGTGAA CTGAAGTGAA ATGTTTCAAG
  AAGATACATT GAGTAATTTG TATCTTTGAA GTGGGACAAG TAAAAGTATC TTTAAAAAAA
  A
  AAAAAAAAAA AAAGAACAAA GCAGCCAGAG AAATGGCTCC ATGGTTAAGA GGACTTGCTG
  CTCCTCCAGG AGACTTGGGT TCCAAGCTCC CAGTGGTGGC AGTATGTGAC TTCAGTCCCA
  GGTGATCTGC TTCCCTCTTG TAGCTTCCTC TGACAATGCA TGCACATGAT ACACATTCAA
  GGAAGCCAAA CACTCATATA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388876239	MGP_WTSI_13_64256034	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217287087					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388876239	MGP_WTSI_13_64256034	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64302540 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5773	CpG island 5773	1059 bp distal
Cpgi5774	CpG island 5774	488 bp distal
Gm47513	predicted gene, 47513	130 bp downstream
Gm61554	predicted gene, 61554	within coordinates
Gm61557	predicted gene, 61557	1269 bp downstream
Rr273318	regulatory region 273318	461 bp proximal
Rr281559	regulatory region 281559	139 bp distal
Rr403821	regulatory region 403821	1089 bp downstream
Tssr120196	transcription start site region 120196	1006 bp downstream
Tssr123018	transcription start site region 123018	1978 bp upstream
Tssr123019	transcription start site region 123019	1581 bp upstream
Tssr123020	transcription start site region 123020	1537 bp upstream
Tssr123021	transcription start site region 123021	1519 bp upstream
Tssr123022	transcription start site region 123022	1449 bp upstream
Zfp367	zinc finger protein 367	1527 bp upstream