rs217289811 SNP Detail

Summary

• ID
  rs217289811
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92424482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTCTTA AGCCCGCGCC
  GCGGGCGCCT CCGGTTCCGT CGTCCGCTCC TTGCGCTCGG ACTCCGCCGA AGTCCGCTCA
  ATCCTCTCCG TGCTCTTCGG TACCCACGCA GTCCTCCCAG TCCGCCCTCC GCTCCAGCCC
  CGGGCTCACG TCTGGTCCTG CGCTCTTCGG GGTCTCAGCG TCTCGCGAGA AGTCCTCGCC
  R
  CAGGCCTTCG GCTCCCGGGT TCAGGGGCGG ATGGGGGACC GCGGAGCGAG GCCGGGGCGG
  CTGATGCCCA TGCTCGCCCT GCTCTCCTGG GCGGCCGGCC TGGGCGTGGC GGAGGAGACG
  CCCGGGCGCA TCCCTGCAGG TGAGCTCTGC TTGCTGGTTT CCACCGGCGG TCTAGAGAGA
  ACTGGGCATG TTTCCTCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323074160	CHEV_9_92437267	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217289811					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92424482 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Cpgi22147	CpG island 22147	within coordinates
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	within coordinates
Tssr86520	transcription start site region 86520	157 bp downstream
Tssr86521	transcription start site region 86521	1 bp upstream