rs217292095 SNP Detail

Summary

• ID
  rs217292095
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101899545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGGGGGC CGGGCCGGCA
  GGGCCGGGGC GGGGCGCGGG GGCGGGCCGG CCGGGGCGGG GCGGACTAGG AAGTCGGAGG
  CCTCCCCCAC CCTCCAGCCT CGGGTTTTCT GCAAGCTTTG CCCTCCGCAC AGTCCCGCAC
  ACCCTGCTTC TCTCCACTCT TCGCCCCGTG AGCCCTGAGA CCCCTTGAGT CTGGCCTCTC
  W
  AGGTCAGGTC TCCCCGCTTT CACTTGGCAT CTCCCCCCCA CCCCCCAGCA GGGGCCCTAA
  GCTAGGCGCT GGGCATTTGT TCTCTTCCTA GTATCTCACT CCCCGCCCCG CAGCCTCCGC
  GGGAAGGCTG AGAAATGCCT TCCGCTCAGC CCGGGAATCT AGAGGTAGCC GCGGCTGGCT
  AGGGGTTAGC CGGAATGGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353658	CHEV_7_109398852	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217292095					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101899545 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	within coordinates
Rhog	ras homolog family member G	220 bp upstream
Rr652562	regulatory region 652562	261 bp distal
Rr652563	regulatory region 652563	within coordinates
Rr652564	regulatory region 652564	583 bp proximal
Tssr2354	transcription start site region 2354	62 bp downstream
Tssr68328	transcription start site region 68328	645 bp downstream
Tssr68329	transcription start site region 68329	624 bp downstream
Tssr68330	transcription start site region 68330	83 bp downstream
Tssr73939	transcription start site region 73939	964 bp upstream
Tssr73940	transcription start site region 73940	917 bp upstream
Tssr73941	transcription start site region 73941	864 bp upstream
Tssr73942	transcription start site region 73942	779 bp upstream
Tssr73943	transcription start site region 73943	252 bp upstream
Tssr73944	transcription start site region 73944	215 bp upstream
Tssr73945	transcription start site region 73945	200 bp upstream
Tssr73946	transcription start site region 73946	4 bp upstream
Tssr73947	transcription start site region 73947	128 bp downstream
Tssr73948	transcription start site region 73948	153 bp downstream
Tssr73949	transcription start site region 73949	189 bp downstream
Tssr73950	transcription start site region 73950	238 bp downstream