rs217296982 SNP Detail

Summary

• ID
  rs217296982
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140843062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCACACAC AGGCCCCACC
  TTCCCAAGTA CACCTGGCAT CGGGGTGTTC CCGATTCCTG TCTTAGAGTG TTTGTGTCCA
  GTAAGAGCTG TGCTAGCCTA GCCAGTTCTT GATTATGAAA GTGAGTGCTG CAAAGGAGGC
  CTGGTGTGTA GGGACTGGGG GTCACCTTCT TTCAAGGGAC TCTACAAGGT CCACTAGAGA
  Y
  ACTATACAGC AAGGAGCAGA CCTGACCCAG GGCTCCACTG ATTTTGAACT ATTTATTGGG
  AGTTGGGATT CTGAGTCAAG GCCACTGACC CAGGTCCATG AGGAAGTGTT CGATGTCTTC
  GTAGAGACTG TTGGTGCTAG ACAAGCACAA GCCGAGACTG CTGCTGTCCA GGGAGGACAC
  ACCCTCACGC TGCACGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373428480	MGP_WTSI_7_148449048	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217296982					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373428480	MGP_WTSI_7_148449048	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140843062 () rs orientation: forward

Symbol	Name	Function Class
Irf7	interferon regulatory factor 7	34 bp downstream
Phrf1	PHD and ring finger domains 1	399 bp downstream
Rr154683	regulatory region 154683	1939 bp proximal
Rr166948	regulatory region 166948	1738 bp proximal
Tssr69941	transcription start site region 69941	34 bp upstream
Tssr75604	transcription start site region 75604	376 bp downstream
Tssr75605	transcription start site region 75605	534 bp downstream
Tssr75606	transcription start site region 75606	672 bp downstream
Tssr75607	transcription start site region 75607	748 bp downstream
Tssr75608	transcription start site region 75608	805 bp downstream
Tssr75609	transcription start site region 75609	823 bp downstream
Tssr75610	transcription start site region 75610	848 bp downstream
Tssr75611	transcription start site region 75611	1104 bp downstream
Tssr75612	transcription start site region 75612	1366 bp downstream