rs217301954 SNP Detail

Summary

• ID
  rs217301954
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53215372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTTTGAG CTAGGGCCAT
  AAGTTTTCCC AGGTTGGCCT CAAAAACATA GCAATCCTCT TGCCTCAGCC TCCAAAATCC
  TGGATTACAG GATTTTTTTT TTTTAGGATT TTTTGAATAC TACAAAATTC CACTGCATAT
  GTATTACAGA CCCCTGGTTT GAGATCACCC TTCAAGACCC TATTCATACT GAACACACAA
  R
  CCCACATTAG AAAAGACAAA CCAGCTAGTG GCCACCATTA GCCTCTTCTG AATTGAGCCC
  GTCTGGCCCC GCCCAGGACC GCAGAGGTTT CTAAGGACCC GCCCACCGGT GCTAGTTTCC
  CAAAAACCCG TGCGGCAGAC TCCAGCCGCT CCAAGATGGC GACTCCCATG CATCGGCTCA
  TAGCTCGAAG GAAAGCGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323672284	CHEV_11_53138047	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217301954					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53215372 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2860	CpG island 2860	46 bp proximal
Gm74485	predicted gene, 74485	within coordinates
Rr447001	regulatory region 447001	within coordinates
Rr447002	regulatory region 447002	90 bp proximal
Rr447003	regulatory region 447003	145 bp proximal
Tssr101382	transcription start site region 101382	129 bp upstream
Tssr107917	transcription start site region 107917	45 bp downstream
Zcchc10	zinc finger, CCHC domain containing 10	144 bp upstream