rs217304847 SNP Detail

Summary

• ID
  rs217304847
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157119808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATTTTACT TAATTGGACT AAGTTCAAAG AGAAATTACT
  GCAGAGAGCT AGTGACTGCT GTATGGAGGA GTGGTCCGAC TCCCCGCTAC ATATCTGGAG
  Y
  GATACTGAAG AGAAGCAGCA TTGCTGTATT GCAAAATTCT ACATGTTCAC AATAGTTAAT
  TAGCACACAT CTAGGCTGTC ATCAGAACGC AAGGGCTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320585255	CHEV_2_157103624	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217304847					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157119808 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12571	CpG island 12571	933 bp proximal
Mroh8	maestro heat-like repeat family member 8	within coordinates
Rpn2	ribophorin II	1210 bp upstream
Rr397441	regulatory region 397441	860 bp upstream
Rr568459	regulatory region 568459	681 bp proximal
Rr568460	regulatory region 568460	1651 bp proximal
Tssr21228	transcription start site region 21228	1110 bp upstream
Tssr21229	transcription start site region 21229	1138 bp upstream
Tssr21230	transcription start site region 21230	1177 bp upstream
Tssr21231	transcription start site region 21231	1390 bp upstream
Tssr27165	transcription start site region 27165	1624 bp downstream
Tssr27166	transcription start site region 27166	1631 bp downstream
Tssr27167	transcription start site region 27167	1668 bp downstream