rs217307659 SNP Detail

Summary

• ID
  rs217307659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96140021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTGGCTC AGTCCTTTCA
  CTGCAACACT TAGGAGGCTG TGATAGGATT TCTGCATGTT GTAGTGCAGC CTGGGCTACA
  AAGGAGCCTG TCCCAAGCAA TATACAAGGT CAGTTATATT TGAACTTTAA TATTATTTGA
  ACTGTCCAGC TCTGGGTAGA GAGAAGCAAG CAAGGAAGCA AGAAACCCTT TTCAGAGGGG
  R
  ATTCTTCCAG TGTAGGTGAT GCGTATGTGA TAAGAGACAG ACAGACACCT TAGTTATGTT
  GGATTGTGGA ACTCACTGGC AGCGGAAACA TGACATGCCA GTAAGTCCAG TGGAGACAGG
  GATTTAATTT TGACTTTTGA ATGTTTTCAC TACTACTGTA TACCCAGGCT CTAAAATAGC
  ACTTGGCTTA TGATCAATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323107359	CHEV_9_96158387	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217307659					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96140021 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	1252 bp upstream
Tssr86589	transcription start site region 86589	729 bp upstream
Tssr86590	transcription start site region 86590	746 bp upstream
Tssr86591	transcription start site region 86591	760 bp upstream
Tssr86592	transcription start site region 86592	823 bp upstream
Tssr86593	transcription start site region 86593	838 bp upstream
Tssr86594	transcription start site region 86594	1040 bp upstream
Tssr86595	transcription start site region 86595	1278 bp upstream
Tssr86596	transcription start site region 86596	1302 bp upstream