rs217313642 SNP Detail

Summary

• ID
  rs217313642
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59438181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCGGGAGA CGCGAGTTGG AGCAGGGCCG
  CCTCCACTAC ACACCCCACA GTCCCCGGGG CGGGCAGTCT GGCGTGCTTC TCGCCGCTCC
  GCCTCCATGA TCCTTCCACG CCCCGACTCT GCGCCTCCAG ATCCGGAGCG CGAAGCGTCC
  W
  GCGCGCCGAG TACCCTGCAC TCACCTTCCG TGCCAGGCTC TCCGCTGACG CCGCGGGCTA
  GGCTGAGCAG CAGCACGAGC CGCAGCAGCC GCTGCAACCC GCATCCTGGA GAGCGGCGCG
  TGCCCCGGGG ACCCCGGCCC ATGCCGCTGG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141026	CHEV_4_59451053	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217313642					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59438181 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14346	CpG island 14346	within coordinates
Rr101075	regulatory region 101075	within coordinates
Susd1	sushi domain containing 1	within coordinates
Tssr37430	transcription start site region 37430	6 bp downstream
Tssr37431	transcription start site region 37431	1957 bp upstream
Tssr41933	transcription start site region 41933	109 bp downstream
Tssr41934	transcription start site region 41934	164 bp downstream
Tssr41935	transcription start site region 41935	469 bp downstream