rs217316380 SNP Detail

Summary

• ID
  rs217316380
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97804607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATCTCCA CAGACATCTC
  TCCATGGCAG AAGGTTGACT ACTTGTCTCG CCGTGTCTCT GGGCATCTGA AGATGGTTGA
  GGTACATTGC TTTGGTCCTT TCTGGGGAGT GTATCACAGC CACGGACCTC TTGGAAATAT
  TGTCTAGATT AGTGGTTTTG GTGATTGCTT TGTTAGGATG GTGGGCCGCC TTGTTCGTGG
  R
  TTTGGAGGTT TAAATGAGAT CGTGGGCTAC TCCTCTTTTT TCCTTGGCAG AGATCTTCAG
  TTGTTTTGTT AGAAAACCTC AGAGCTCTGT ACCTTTTCCT TCCTAGAGAG TTTGCAAACA
  AGGGGGGTTG TTTTTATGTC TCAGCAGCGT CCGTCCGTGG CTGCTGTTAA CGTAGCTCAG
  CACTAGGTGT TTTCAAAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369337423	MGP_WTSI_6_97777640	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217316380					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369337423	MGP_WTSI_6_97777640	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97804607 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Tssr1945	transcription start site region 1945	330 bp downstream
Tssr57866	transcription start site region 57866	677 bp downstream
Tssr57867	transcription start site region 57867	404 bp downstream
Tssr57868	transcription start site region 57868	382 bp downstream
Tssr57869	transcription start site region 57869	344 bp downstream
Tssr57870	transcription start site region 57870	185 bp downstream
Tssr57871	transcription start site region 57871	167 bp downstream
Tssr57872	transcription start site region 57872	593 bp upstream
Tssr57873	transcription start site region 57873	644 bp upstream
Tssr57874	transcription start site region 57874	654 bp upstream
Tssr57875	transcription start site region 57875	671 bp upstream
Tssr57876	transcription start site region 57876	706 bp upstream
Tssr57877	transcription start site region 57877	1614 bp upstream
Tssr57878	transcription start site region 57878	1658 bp upstream
Tssr57879	transcription start site region 57879	1674 bp upstream
Tssr57880	transcription start site region 57880	1727 bp upstream
Tssr57881	transcription start site region 57881	1927 bp upstream