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rs217330278 SNP Detail
Summary
  • ID
    rs217330278
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr1:19278966 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGCTCCCCTA AATATACAAG
    AATAGGAAAA CTGTCTTTAA AATCTCAGTA ATGGTTCTCC TAAAAGAAAA AAAAAAAAAA
    CTATGTAGAA AATTTGGGGA CTGATGTGCG TGGTTTCTCA TTGTCAATTA TTAAAACACT
    TTAGTTAGTG GCTGCATTGA TTCGCCATTT TCAAAACAGA TTTTTAATGT ATCTATTTAT
    W
    TTTCTCGTTT TGAACCACTA TATTCCCTTT AAATGCACGG TTAGTCTGTG GATTCTGTGA
    CCCAGAGGTG TTTATGTAAC TAATGTGACT ATCTGCGTGT AAATTCATGT TTATGATTTT
    TTATAATATA TATGTGTGCA TGTGCGTGTG TGTGTGTGTG CGCGCGCGCG CGCGCATGTG
    TGTGTGTGTG TGTGTGTGTG                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss348817493 MGP_WTSI_1_19198823 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217330278 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss348817493 MGP_WTSI_1_19198823 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:19278966 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi65 CpG island 65 939 bp proximal
Rr408237 regulatory region 408237 852 bp distal
Rr408238 regulatory region 408238 11 bp proximal
Rr408239 regulatory region 408239 229 bp proximal
Tfap2b transcription factor AP-2 beta 172 bp upstream
Tssr6030 transcription start site region 6030 198 bp upstream
Tssr6031 transcription start site region 6031 241 bp upstream
Tssr6032 transcription start site region 6032 256 bp upstream
Tssr6033 transcription start site region 6033 272 bp upstream
Tssr6034 transcription start site region 6034 296 bp upstream
Tssr6035 transcription start site region 6035 328 bp upstream
Tssr6036 transcription start site region 6036 352 bp upstream
Tssr6037 transcription start site region 6037 370 bp upstream
Tssr6038 transcription start site region 6038 398 bp upstream
Tssr6039 transcription start site region 6039 413 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory