rs217338232 SNP Detail

Summary

• ID
  rs217338232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90651518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATAAATG AGAGCATTTA
  ACTGGGGCTG GCTTACAGTT CAGAGGTTCA ATCCTTTGTC GTCATGGCAG GAAGCATGCC
  AGCATGCAGG CAGACATGGT GCTGGAGAGG AACTGAGAGT TCTACATGTA AATCCATGGA
  GAGTGGGGGG TGGCAAAAGC TGTAGGCCTG GCTTGGGCTT CTGAAACTGC AAAGCCCAAC
  Y
  CAAGTGATGC ACTTCCTCCA CCAACAAGGC CACATCTACT CCAAAAAGGC CATATCTTCT
  AATGTTACTC CCTAAGCATT CAAATACATG AGCCTATGAG GGCCACCATG CCTGTCTACC
  CAAGATGGGG TTTTCCCACT AATTCTGTCA GTTGTAAGAA TGCGTGGAGC CGTGAGTGAC
  TTCTGAACTG TGCTAAGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320391261	CHEV_2_90661331	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217338232					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90651518 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agbl2	ATP/GTP binding protein-like 2			Intron
				Noncoding-Transcript-Variant
Rr373531	regulatory region 373531			1448 bp upstream
Rr560574	regulatory region 560574			1980 bp proximal