rs217342653 SNP Detail

Summary

• ID
  rs217342653
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141547577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATAAACAG GACATCTGAT
  ATACAATCAC AGTGGGGTCA CGACCCACAG GTTGAGAACC GCTTCTCTAG CCTCATCTAA
  GTTAGTTTTT AAGTTAGAGT CTATCCTTAG CTTAGGGCTC ACCCAATTGG ATGATGCTGC
  TGGCTATTGA ACCCCAGGAA TCGGCCTGTT TCTACTTACC CATAGTTGGG ATCTTAAGTA
  Y
  GCACAACCAC ACCTGGCTTC TTTCACCGGT TCTGAGGACA TGTGTCCCCA TGCTTGCAAG
  GTAAGCTGTT TACCAACTGA GTTCCTCAAC ATCCCCACCT CATTATCATT CCTTAATCAC
  AGTGTATCAT GCTCTATAAA CGGGCCAGTC CTCACAGTGA TATTCATTCC TGTTTGGCGA
  AGGGGACATG GACGACTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363530432	MGP_WTSI_4_141376181	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	T	T	T	C	C	T	T	C	C	T	T	C	C	C	C	T	C	T	C	C	C	C	T	C	C	T	C	T	C	C	C	C	C	C	C	C	T	C	C	C	T	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217342653					SNP	C	C	C	C	T	T	T	T	C	C	T	T	C	C	T	T	C	C	C	C	T	C	T	C	C	C	C	T	C	C	T	C	T	C	C	C	C	C	C	C	C	T	C	C	C	T	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363530432	MGP_WTSI_4_141376181	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141547577 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	1189 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	267 bp distal
Gm56298	predicted gene, 56298	within coordinates
Tssr40108	transcription start site region 40108	1222 bp downstream
Tssr40109	transcription start site region 40109	1187 bp downstream
Tssr40110	transcription start site region 40110	1164 bp downstream
Tssr40111	transcription start site region 40111	1059 bp upstream
Tssr40112	transcription start site region 40112	1087 bp upstream
Tssr40113	transcription start site region 40113	1116 bp upstream
Tssr40114	transcription start site region 40114	1438 bp upstream
Tssr40115	transcription start site region 40115	1472 bp upstream
Tssr40116	transcription start site region 40116	1512 bp upstream
Tssr44373	transcription start site region 44373	1980 bp upstream
Tssr44374	transcription start site region 44374	1134 bp upstream
Tssr44375	transcription start site region 44375	901 bp upstream
Tssr44376	transcription start site region 44376	883 bp upstream
Tssr44377	transcription start site region 44377	274 bp upstream
Tssr44378	transcription start site region 44378	153 bp upstream
Tssr44379	transcription start site region 44379	1086 bp downstream
Tssr44380	transcription start site region 44380	1098 bp downstream
Tssr44381	transcription start site region 44381	1454 bp downstream
Tssr44382	transcription start site region 44382	1473 bp downstream
Tssr44383	transcription start site region 44383	1524 bp downstream
Tssr44384	transcription start site region 44384	1991 bp downstream
Tssr44385	transcription start site region 44385	1997 bp downstream