rs217352198 SNP Detail

Summary

• ID
  rs217352198
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:41864942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAGGAGG CAGGGGACTA
  ACTGCCTGCG GGTCCTCTCC TGCACGCGCC CATTCATCCC AGCAACCAAC GGTCGCAGAA
  GGCTAGGCTT TAAAGTCCCT GTGTCCCCCG ACATCCTCCT GCCCAGCACG GGAGCTCAAG
  AAATACCTAT TGAATGAACC CTTGCACGGA CGGGTGCTAA GAATGGAACT AAAGTGAGAG
  W
  GGACACTCAA GAGGCAGCTA GCGTGTGGGG AGGGCCCTCG GCCAGAGTGC ATCGTCGCCA
  TTCGTGTGGG TCCGGGTGGT GGCCCCCACC CCAGGAGCTG GCCTGGTCCC GCGGGCCGGC
  TGGCGGGCGG GCGGCGGGCA CGCGCACAGG GCGCAGGCGC GAGCAAGGCC GCGGCCTGAG
  GCGAGCCAGG CCAAGGCTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364674786	MGP_WTSI_5_42098838	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217352198					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364674786	MGP_WTSI_5_42098838	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:41864942 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15822	CpG island 15822	within coordinates
Gm72243	predicted gene, 72243	637 bp upstream
Gm72274	predicted gene, 72274	within coordinates
Rab28	RAB28, member RAS oncogene family	within coordinates
Rr399068	regulatory region 399068	492 bp upstream
Tssr46070	transcription start site region 46070	421 bp downstream
Tssr50838	transcription start site region 50838	683 bp upstream
Tssr50839	transcription start site region 50839	170 bp upstream
Tssr50840	transcription start site region 50840	71 bp downstream
Tssr50841	transcription start site region 50841	370 bp downstream
Tssr50842	transcription start site region 50842	519 bp downstream
Tssr50843	transcription start site region 50843	536 bp downstream