rs217353691 SNP Detail

Summary

• ID
  rs217353691
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:93778611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGATACAT GATCAAAACT ATTCCTTCTC
  ATCATTTTGA CTCATGGTCT TTGCAAACCC ATGCCCCCTC CAAAAGGAAG GCCCTTTCTC
  ACAAATGCTT CTTGTAACGT TTATTTATTT ATAGGATAGG ATGCTGTTGg ggggtggggg
  Y
  gggggtgggg gtgggggAtc agagaacagg tggaggtagt catcttaact tatgccatgt
  gcgaaccagg aatcaaaccc aggtcatcaa gattgggagc agacaccttt aacctactaa
  gaacttgctc gaacctgCCT GTCTTCCCCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323810028	CHEV_11_93749099	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217353691					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:93778611 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3539	CpG island 3539	1212 bp distal
Mbtd1	mbt domain containing 1	within coordinates
Rr247507	regulatory region 247507	10 bp distal
Rr366736	regulatory region 366736	1691 bp downstream
Tssr3641	transcription start site region 3641	1908 bp downstream
Tssr104151	transcription start site region 104151	1861 bp downstream
Tssr104152	transcription start site region 104152	1631 bp downstream
Tssr104153	transcription start site region 104153	1575 bp downstream
Tssr104154	transcription start site region 104154	1551 bp downstream
Tssr104155	transcription start site region 104155	1526 bp downstream
Tssr110110	transcription start site region 110110	1645 bp upstream
Tssr110111	transcription start site region 110111	1273 bp upstream