rs217362818 SNP Detail

Summary

• ID
  rs217362818
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109720887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTCTGGC TGTGAGGGAC
  ACAAGACTGT GTGAGAGGCC ACCTCTGTGT CCTAGTCCTG CAGCTCATTA TCTGAGTTTC
  GCGCTGGGCA AGGTCCAGAG CTCGGTCACT GTTTCCGGCT CGGACCGCGA CTATAGAACG
  TGACTGGACA CAGCCACGCC CAGAACGCCC CAGGGGTCGG GCCTCAGAAC CTGGGGTTGG
  R
  CCAGGCTTCT AGGCGTCCCC AAAGGCTGCA CGGTGTCCGG ATGCTTCTGA ACCCGGAGAC
  AGGGAGGCCG ACCCAAGGCC AGCACTGGGC AGTAGCCGCC GTCCTCTCGC CCCTCCTCGC
  AGGGCGGCTC CCGGCAGGCT CCGGTCCTCT AAACATAGAC TCTGGGTGGG GTTCTGTGCA
  ATCCAGGCCC ACTCATTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322394505	CHEV_7_117265194	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217362818					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109720887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19571	CpG island 19571	within coordinates
D7Wsu130e	DNA segment, Chr 7, Wayne State University 130, expressed	1663 bp distal
Gm45819	predicted gene 45819	within coordinates
Rr400541	regulatory region 400541	92 bp upstream
Rr653190	regulatory region 653190	within coordinates
Tssr68487	transcription start site region 68487	353 bp upstream
Tssr68488	transcription start site region 68488	573 bp upstream
Tssr68489	transcription start site region 68489	619 bp upstream
Tssr68490	transcription start site region 68490	827 bp upstream
Tssr68491	transcription start site region 68491	1039 bp upstream
Tssr74248	transcription start site region 74248	1348 bp upstream
Tssr74249	transcription start site region 74249	87 bp upstream
Tssr74250	transcription start site region 74250	1210 bp downstream
Tssr74251	transcription start site region 74251	1239 bp downstream
Tssr74252	transcription start site region 74252	1321 bp downstream
Wee1	WEE 1 homolog 1 (S. pombe)	379 bp upstream