rs217393311 SNP Detail

Summary

• ID
  rs217393311
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128584104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCGTAGGT CTCTGATCAG
  TTAACCTGGG CGGCCGAGAG TGGTCGGCGT GCCGAGTAGA CCTGCCCACT TTTAAGTGTT
  AGCCCGGGTT TTCGTGTATC CCTGGGGCTT CTTTGCCCAT GCCAACACGC GCCCTAGGGT
  TTGGTGCAGG CGAGGGGCCT TGCATATTCC TTTCCTCTTT TACCAGCTTT CCTGCTGGGT
  S
  CCGGTGGGCC TTGAGCCTGC GAGGACTGTC TGGGATAAGG CTTATGCCCA AACTTCTCTC
  CGAGCCCTAG GGATTGTTTT ATATACATCA GGAGGTCAAC AGTGGCGTCG GTGGTAGTCT
  AAGAGCCCAT GACTGTGAGC GTCTTACACT CGCCTTTTCC GCCTCCCGCG TCAGAGAAAT
  GGTGCAGTCT CTCTTTAAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323535825	CHEV_10_128185291	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217393311					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128584104 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2419	CpG island 2419	within coordinates
Gm66065	predicted gene, 66065	1886 bp upstream
Pym1	PYM homolog 1, exon junction complex associated factor	within coordinates
Rr224483	regulatory region 224483	1903 bp distal
Rr224484	regulatory region 224484	within coordinates
Rr385481	regulatory region 385481	within coordinates
Tssr96443	transcription start site region 96443	1761 bp downstream
Tssr96444	transcription start site region 96444	436 bp downstream
Tssr96445	transcription start site region 96445	340 bp downstream
Tssr96446	transcription start site region 96446	266 bp upstream
Tssr96447	transcription start site region 96447	516 bp upstream
Tssr99956	transcription start site region 99956	1983 bp upstream
Tssr99957	transcription start site region 99957	1923 bp upstream
Tssr99958	transcription start site region 99958	590 bp upstream
Tssr99959	transcription start site region 99959	491 bp upstream