rs217399342 SNP Detail

Summary

• ID
  rs217399342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23896428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCCAGGC ACTCAAATTC
  CGTTTCTGAC CTCCCCAAAG TCCGAGGTTT ACCGTCGTCT GAGCCGTGCA TACCTGGTGC
  TTGCTCCCCG GCCGCGGCGC GCATCAACAC CAAGCCGAAT CCCAACACGA GGATCTGCGG
  CAGAGACCGC GGCCAAGCCG AAGCCATGAT TGCCGGTCCC GAGGCAAGAA CTGTCTGCTC
  Y
  CACCACCCGC AAGCCAGACT CAGGGCTGCG GCTCCGCCCC CGCCCCCGCC TTCCGGGGCG
  GAGCGCTGGC CTCGGCCCGC CCCAACAGCC ACTCTGCTTT GCGAGTAAGC AGTTAGTTAA
  ACCCAGTCAG TTCAGTAAAA CCATTCATTC AACACAGTCC CGCCAAGTGT CTACCCTACT
  CCGCCCTCTG CAAACTTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397840200	MGP_WTSI_17_23814421	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217399342					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397840200	MGP_WTSI_17_23814421	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23896428 () rs orientation: forward

Symbol	Name	Function Class
Cldn6	claudin 6	1917 bp upstream
Cpgi8683	CpG island 8683	within coordinates
Cpgi8684	CpG island 8684	1838 bp proximal
Rr523105	regulatory region 523105	1551 bp distal
Rr523106	regulatory region 523106	1169 bp distal
Rr523107	regulatory region 523107	within coordinates
Rr523108	regulatory region 523108	1462 bp proximal
Tnfrsf12a	tumor necrosis factor receptor superfamily, member 12a	5 bp upstream
Tssr142943	transcription start site region 142943	1909 bp upstream
Tssr146638	transcription start site region 146638	1566 bp upstream
Tssr146639	transcription start site region 146639	871 bp upstream
Tssr146640	transcription start site region 146640	825 bp upstream
Tssr146641	transcription start site region 146641	808 bp upstream
Tssr146642	transcription start site region 146642	770 bp upstream
Tssr146643	transcription start site region 146643	within coordinates
Tssr146644	transcription start site region 146644	23 bp downstream