rs217399471 SNP Detail

Summary

• ID
  rs217399471
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:44236889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTATTT TCATTGGTTT
  ATTTGGAAAG ACAGGTTCTT TTTGCAGGTC ACTGAGGCCT CATCATGGCA AGTGTATGCA
  ATTTCAACTC AGCTTACTTT CAGAGTTATC ATTGGGGGAA TAGGATCTAA ATTTTTGTTT
  TCAAGTAGTC AGTAGAAGAA AAAAAAGAAT ATCCACATTT TTGTTTTCAA ATAGTCAGAG
  R
  AAGCAAAAAA GAAGGGTAAA TAAAAACAAG TATGTTCTAA AGATATGCAA TATTCACATT
  CAAGCTAAAA TCTCTCCAGA TATTGGCTTC AGTCTCTTAT ATTTACCAAA CTCCATGTGC
  AGTTCTTGCA TGCCTAAGAC AATAGTCCAC GGGCTTCATA TTCTGCTGGT CAACTTAAGA
  ACTAATCAAG AACAGGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349446580	MGP_WTSI_1_44254574	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	A	A	A	A	G	G	G	A	A	A	A	A	A	A	G	G	A	G	G	G	G	A	G	A	A	G	A	G	G	A	A	A	G	A	G	G	A	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217399471					SNP	G	G	G	A	A	A	A	G	G	G	A	A	A	A	A	A	A	G	G	A	G	G	G	G	A	G	A	A	G	A	G	G	A	A	A	G	A	G	G	A	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349446580	MGP_WTSI_1_44254574	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:44236889 () rs orientation: forward

Symbol	Name	Function Class
Cpgi227	CpG island 227	917 bp proximal
Rr410478	regulatory region 410478	502 bp proximal