rs217401474 SNP Detail

Summary

• ID
  rs217401474
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115566826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAATTAT TTACAAGGGA
  AGTTAACTCT AAACCTGGTG GAGAGTCAGC CCAGGTTCTT CCAAATCAAA TGGAAGGGAG
  CTAGGACCCC AGATGAAAGG GAGTCACTTG GAGGGTGCAC AGCCTGGAAT CTCCGAGACA
  CCGACTTCTC TCTCCACTTC ATTGGGGACC CTGCCAGCGG GCAAGTGTTT GGAATCAGTT
  Y
  CCCCCCACTC CAGACAGTCC GAAAGGGGCT GGAAGTGAGA CAGGAGGAGG TGCCCACAGA
  AGGCCGGGGA GGTGACAACT TGGGAAACCT GGCTCGAGGC TGGGCATTCT CTCAGCTGAC
  CATAGGGGTC CCAGGTGTGG AGAAAAGGGG TTTAGGGGAG TTACAAGGCA CACTTAATTT
  GGACAGCAAG GGCCGAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366356325	MGP_WTSI_5_115878776	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217401474					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366356325	MGP_WTSI_5_115878776	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115566826 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16370	CpG island 16370	253 bp proximal
Gm43231	predicted gene 43231	within coordinates
Msi1	musashi RNA-binding protein 1	908 bp upstream
Rr618242	regulatory region 618242	within coordinates
Rr618243	regulatory region 618243	727 bp proximal
Tssr48228	transcription start site region 48228	738 bp upstream
Tssr48229	transcription start site region 48229	755 bp upstream
Tssr48230	transcription start site region 48230	782 bp upstream
Tssr48231	transcription start site region 48231	818 bp upstream
Tssr48232	transcription start site region 48232	855 bp upstream
Tssr48233	transcription start site region 48233	929 bp upstream
Tssr48234	transcription start site region 48234	953 bp upstream
Tssr48235	transcription start site region 48235	992 bp upstream
Tssr48236	transcription start site region 48236	1177 bp upstream
Tssr48237	transcription start site region 48237	1550 bp upstream
Tssr48238	transcription start site region 48238	1813 bp upstream
Tssr52797	transcription start site region 52797	728 bp downstream