rs217402623 SNP Detail

Summary

• ID
  rs217402623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:18678191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAGACTGC AATTGTCATA
  ATGGATTAAG AGCGTACTTT AAGACAAATC ACTTCTAGAT AATTCCCTCA AATCTATCAA
  CACATTCCAG AACTCCTTGG GTCTCCACAC CCCCCCCCCC CGTTTCATAC TAGATACTTG
  GACAACAAGT ATGAAAGTGG AAGCTGTTCT TAAAGCCCCC CCCCCCCCCC AATTAACCAC
  Y
  ACCTGGTTTA TCTCGAAGCT GTGTGTGTGT GTGTGAGAGA GAGAGAGAGA GCGAGGAGAG
  GTGGGGGGAC TTGAAGATAT TAATGGGATT TTGATATTTC TGTTGTGCAT GCTAATGTAT
  GCCCTCCTAT CAAGCTTCTT TGATGTATTT ATGTTCATGG AGTCAATTGC TCTAAAATGT
  CTTTTGAAAG TTGTTCATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss353255565	MGP_WTSI_2_18595007	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs217402623					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353255565	MGP_WTSI_2_18595007	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:18678191 () rs orientation: forward

Symbol	Name	Function Class
Commd3	COMM domain containing 3	within coordinates
Cpgi11239	CpG island 11239	286 bp distal
Rr372858	regulatory region 372858	within coordinates
Rr552336	regulatory region 552336	1006 bp distal
Rr552337	regulatory region 552337	947 bp distal
Tssr411	transcription start site region 411	1112 bp downstream
Tssr16385	transcription start site region 16385	898 bp downstream
Tssr16386	transcription start site region 16386	876 bp downstream