rs217403936 SNP Detail

Summary

• ID
  rs217403936
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149983324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TTATGATTAC CTCTCTGAAC TATGGTGTGA ACAATCAAAC AAAATGATGA
  R
  ATTAACGTTC ATGGATAAAT TCTAAGAAAA CTAGTGTATT TTTTTGAAAA           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320045554	CHEV_1_151954703	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217403936					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149983324 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr9275	transcription start site region 9275	1987 bp downstream
Tssr9276	transcription start site region 9276	1973 bp downstream
Tssr9277	transcription start site region 9277	1917 bp downstream
Tssr9278	transcription start site region 9278	1896 bp downstream
Tssr9279	transcription start site region 9279	1878 bp downstream
Tssr9280	transcription start site region 9280	1778 bp downstream
Tssr9281	transcription start site region 9281	1758 bp downstream
Tssr9282	transcription start site region 9282	1724 bp downstream
Tssr9283	transcription start site region 9283	1709 bp downstream
Tssr9284	transcription start site region 9284	1697 bp downstream
Tssr9285	transcription start site region 9285	1683 bp downstream
Tssr9286	transcription start site region 9286	1604 bp downstream
Tssr9287	transcription start site region 9287	1088 bp downstream
Tssr9288	transcription start site region 9288	974 bp downstream
Tssr9289	transcription start site region 9289	957 bp downstream
Tssr9290	transcription start site region 9290	803 bp downstream
Tssr9291	transcription start site region 9291	755 bp downstream
Tssr9292	transcription start site region 9292	627 bp downstream
Tssr9293	transcription start site region 9293	611 bp downstream
Tssr9294	transcription start site region 9294	588 bp downstream
Tssr9295	transcription start site region 9295	561 bp downstream
Tssr9296	transcription start site region 9296	549 bp downstream
Tssr9297	transcription start site region 9297	536 bp downstream
Tssr9298	transcription start site region 9298	510 bp downstream
Tssr9299	transcription start site region 9299	492 bp downstream
Tssr9300	transcription start site region 9300	473 bp downstream
Tssr9301	transcription start site region 9301	340 bp downstream
Tssr9302	transcription start site region 9302	316 bp downstream
Tssr9303	transcription start site region 9303	240 bp downstream
Tssr9304	transcription start site region 9304	220 bp downstream
Tssr9305	transcription start site region 9305	211 bp downstream
Tssr9306	transcription start site region 9306	199 bp downstream
Tssr9307	transcription start site region 9307	173 bp downstream
Tssr9308	transcription start site region 9308	156 bp downstream
Tssr9309	transcription start site region 9309	134 bp downstream
Tssr9310	transcription start site region 9310	109 bp downstream
Tssr9311	transcription start site region 9311	86 bp downstream
Tssr9312	transcription start site region 9312	68 bp downstream
Tssr9313	transcription start site region 9313	60 bp downstream
Tssr9314	transcription start site region 9314	41 bp downstream
Tssr9315	transcription start site region 9315	42 bp upstream
Tssr9316	transcription start site region 9316	225 bp upstream
Tssr9317	transcription start site region 9317	502 bp upstream
Tssr9318	transcription start site region 9318	1231 bp upstream