rs217406257 SNP Detail

Summary

• ID
  rs217406257
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91763006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAACCGCCC ACCCCTGACC
  CTGGGGCCTC AGGCTCACCT CAAGCAGATC CCCCCCCCCC CCCCCAGTAC AAGCCAGGGG
  GAGGGGACTG CTCCAGGGCA CAGGGCCAAA AGACCAAAGA ACCCAAGCCT GGCCCCCGCC
  CCACCTCTTT TACTTTCATT GTTATCATCC CTGCAGGAGC GGGAAAATCA GCTCCGCCCC
  W
  GGCGCTGTGA GCCTAAGGCC CTAGGCAGAG GTCAGGATCG GGGCAGACCC ATCTCCCGAA
  GTGATCTGAG ATGTTGGTGG CCATTTCCCC GACCCCAAGG ATTACCCAGC ACACACCATT
  GCTCATGTGA GTCCCCCACA ACAAGAAAAA AAGAAAACAA GAAAGGAAAA AAAATTCACT
  TTACTGAGTC ACACCCAGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354821189	MGP_WTSI_2_91772818	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217406257					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354821189	MGP_WTSI_2_91772818	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91763006 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11916	CpG island 11916	476 bp distal
D2Mit1007	DNA segment, Chr 2, Massachusetts Institute of Technology 1007	690 bp distal
D2Mit1008	DNA segment, Chr 2, Massachusetts Institute of Technology 1008	529 bp distal
Dgkz	diacylglycerol kinase zeta	163 bp downstream
Gm39876	predicted gene, 39876	within coordinates
Gm75422	predicted gene, 75422	within coordinates
Mdk	midkine	658 bp upstream
Rr560810	regulatory region 560810	391 bp distal
Rr560811	regulatory region 560811	within coordinates
Tssr25213	transcription start site region 25213	1723 bp upstream
Tssr25214	transcription start site region 25214	1127 bp upstream
Tssr25215	transcription start site region 25215	991 bp upstream
Tssr25216	transcription start site region 25216	975 bp upstream
Tssr25217	transcription start site region 25217	938 bp upstream
Tssr25218	transcription start site region 25218	889 bp upstream
Tssr25219	transcription start site region 25219	868 bp upstream
Tssr25220	transcription start site region 25220	672 bp upstream
Tssr25221	transcription start site region 25221	653 bp upstream