rs217413297 SNP Detail

Summary

• ID
  rs217413297
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98850493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCCTCCT AACCCTGGCT
  GGGGCCATTA GCCTGAATTA ATGAATTAGT GCACATTTAT TAGAACAAAA GATGGTTGGG
  TGCAGAGTAT AATTTTTTTC TTTGCAGAAA ATCCATTGTT TTTTGAAGGT TTTCCACTGT
  ATGGAATGGA AATATTCTTA AAGCAGGCTA AGTTAGAAAC AATGAGCGCC AACATTTTTT
  W
  AAAAAACAAG TGAAAAGATA GCTAAATTTA AAAGTAGAAA ATAATATTTT TATCCTATGA
  ATCTCTACAT ACCACTAATA TTTCATTCTA TAGAGATACA CGTCTGTTGT GGAGGGACTA
  CTTTCATTGT CTGCGGGGGT GGGGGGCGGG GAAGGGCGTT TCCCTGGGTT CTGACCATCA
  GCGTACTCTA GGATTCACAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss395146329	MGP_WTSI_15_98783043	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs217413297					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395146329	MGP_WTSI_15_98783043	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98850493 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7685	CpG island 7685	377 bp proximal
Gm49450	predicted gene, 49450	within coordinates
Gm56698	predicted gene, 56698	1953 bp downstream
Rr370012	regulatory region 370012	606 bp upstream
Rr404613	regulatory region 404613	858 bp upstream
Rr509236	regulatory region 509236	155 bp proximal
Rr509237	regulatory region 509237	656 bp proximal
Rr509238	regulatory region 509238	929 bp proximal
Rr509239	regulatory region 509239	1081 bp proximal
Tssr132970	transcription start site region 132970	439 bp upstream
Tssr132971	transcription start site region 132971	1132 bp upstream
Tssr136333	transcription start site region 136333	1334 bp upstream
Tssr136334	transcription start site region 136334	863 bp downstream
Tssr136335	transcription start site region 136335	916 bp downstream
Tssr136336	transcription start site region 136336	929 bp downstream
Tssr136337	transcription start site region 136337	975 bp downstream
Tssr136338	transcription start site region 136338	985 bp downstream
Tssr136339	transcription start site region 136339	1025 bp downstream
Tssr136340	transcription start site region 136340	1050 bp downstream
Tssr136341	transcription start site region 136341	1076 bp downstream
Tuba1a	tubulin, alpha 1A	within coordinates