rs217417743 SNP Detail

Summary

• ID
  rs217417743
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:130168809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAAGAAA ACTATGCTGG
  TAACACAAAC AAAGCAATAC TTTTTTGCTG TGATTATCAC ACAGCTCAGT ACAAAATGCG
  TTAGGTTTAT GCTTTTTCTA CTCCACCAGA CTATAAAATA GACAGCTTAA CAGCATATAA
  AGCAGTGAAT TTATTAAATA ATCTTGTGTT TTATGAATCG CGGCATGATG CGGTGAGAGG
  S
  GGCACCTGCC AAGGTGTCCC CCTGAACAAT CAAGCCATAT GGCAGGCCTA GTACAGAAAA
  AAGTTTATTG GAAGGAAGCT GAGGAGCAGA ATGGAGACCT GGAAAGGAGT AGAGGCAGAG
  AAAGGAAGGG AGACAGAGAA GGATAGAAAG AGGGAGGAGA GAGGAAGAGA AGAAGAAAGG
  CTTCAAGCTT GAAAGAGAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323545586	CHEV_10_129769996	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217417743					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:130168809 () rs orientation: forward

Symbol	Name	Function Class
Rr441431	regulatory region 441431	1758 bp distal
Tespa1	thymocyte expressed, positive selection associated 1	within coordinates
Tssr96492	transcription start site region 96492	1961 bp downstream
Tssr96493	transcription start site region 96493	1909 bp downstream
Tssr96494	transcription start site region 96494	36 bp upstream