rs217420115 SNP Detail

Summary

• ID
  rs217420115
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:94900890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGCAGAC TCCCTAGCGC
  TGAGACTCCC GCGGTCCGAG AAGTAGCGGC AATTGGGATC CCGGGGCCGG CCGCGGGCAC
  CCGCCGCCTC CTCCCCTCGG TCCTAGCTGC TTCCGCCCCG CCCGCCCTCC TCTTCCCTCC
  TTCCCTACCG TTCTTTGTCT CCCGGGCGCT CGGCCTCCCC ATAAGCGTAT CGCCCCCCCC
  S
  CCCCCCCCGT CGCCTTATCC CGGGCGACCC CCCACGGACC TAGCCACTGC GACGCTACAC
  AAATCGGCCG GTGGCGCGAG GGTTCGCGAC CCCCGGGGTT TGGCGGGGGC GGGGCGGGAG
  GTGGCGTTCA GGTTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCACACA
  CACACACACA CACACACACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	LP/J	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	RF/J	RIIIS/J	SPRET/EiJ
ss384337420	MGP_WTSI_11_94871378	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	C	C	G	G	G	C	C	G	G	G	G	G	C	C	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	LP/J	MOLF/EiJ	NON/ShiLtJ	NZW/LacJ	RF/J	RIIIS/J	SPRET/EiJ
rs217420115					SNP	G	G	G	C	C	G	G	G	C	C	G	G	G	G	G	C	C	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384337420	MGP_WTSI_11_94871378	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94900890 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm36385	predicted gene, 36385			within coordinates
Gm51875	predicted gene, 51875			730 bp upstream
Gm72634	predicted gene, 72634			within coordinates
Rr454922	regulatory region 454922			1676 bp distal
Rr454923	regulatory region 454923			721 bp distal
Rr454924	regulatory region 454924			175 bp distal
Rr454925	regulatory region 454925			within coordinates
Rr454926	regulatory region 454926			177 bp proximal
Rr454927	regulatory region 454927			916 bp proximal
Rr454928	regulatory region 454928			1824 bp proximal
Samd14	sterile alpha motif domain containing 14			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr104328	transcription start site region 104328			282 bp downstream
Tssr104329	transcription start site region 104329			174 bp downstream
Tssr104330	transcription start site region 104330			145 bp downstream
Tssr104331	transcription start site region 104331			117 bp downstream
Tssr104332	transcription start site region 104332			101 bp downstream
Tssr104333	transcription start site region 104333			35 bp downstream
Tssr104334	transcription start site region 104334			11 bp upstream
Tssr104335	transcription start site region 104335			36 bp upstream
Tssr104336	transcription start site region 104336			112 bp upstream
Tssr104337	transcription start site region 104337			180 bp upstream
Tssr104338	transcription start site region 104338			213 bp upstream
Tssr104339	transcription start site region 104339			233 bp upstream
Tssr104340	transcription start site region 104340			302 bp upstream
Tssr104341	transcription start site region 104341			320 bp upstream
Tssr104342	transcription start site region 104342			408 bp upstream
Tssr110238	transcription start site region 110238			229 bp downstream