rs217429609 SNP Detail

Summary

• ID
  rs217429609
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:44509880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTCCTTC TCCACTCTTT
  TCCCCCCTTC TTTCTCAGTT TCACTCTTCG TTTTTCTCTT CTCTTTCCTC ACCTGGCTCT
  CTCCCCCGTT TCTCTCTCTC TCTCTCTCTC TCTCTCTCCA TTTTTCTTCT TGGAGTCTCC
  TCTTATTTCT CCTATCTGGT TCTTTACTCT CTCCTCTCTC CACTTCTTAG CCTTCAGTTT
  K
  TCTCAGTCTG CCTGTAGAAT AGTGATTTCC AACTTTAATT TTCACATCTC CTAAAAGCCA
  CCCTCATCCA CTGTCACCTT GGCCTTCCCC AGTCCCTCTC CCACTCTCCA GATCCTACAC
  TGAGTGATTT GGAGGCCATG CTCTTGGAGA CCAACTTGAG GAACTTCCCT GGACACACCC
  AGTGCCCTGT CCAGGGGCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383201284	MGP_WTSI_11_44432555	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217429609					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383201284	MGP_WTSI_11_44432555	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44509880 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2762	CpG island 2762	1750 bp distal
Cpgi2763	CpG island 2763	424 bp distal
Cpgi2764	CpG island 2764	719 bp proximal
D11Mit175	DNA segment, Chr 11, Massachusetts Institute of Technology 175	428 bp proximal
Ebf1	early B cell factor 1	within coordinates
Rr369170	regulatory region 369170	1740 bp downstream
Rr445653	regulatory region 445653	1726 bp distal
Rr445654	regulatory region 445654	337 bp distal
Tssr3469	transcription start site region 3469	1764 bp upstream
Tssr101029	transcription start site region 101029	1751 bp downstream
Tssr101030	transcription start site region 101030	1717 bp downstream
Tssr101031	transcription start site region 101031	1692 bp downstream
Tssr101032	transcription start site region 101032	1656 bp downstream
Tssr101033	transcription start site region 101033	1540 bp downstream
Tssr101034	transcription start site region 101034	1510 bp downstream
Tssr101035	transcription start site region 101035	1495 bp downstream
Tssr101036	transcription start site region 101036	1423 bp downstream
Tssr101037	transcription start site region 101037	1393 bp downstream
Tssr101038	transcription start site region 101038	1350 bp downstream
Tssr101039	transcription start site region 101039	1166 bp downstream
Tssr101040	transcription start site region 101040	1118 bp downstream
Tssr101041	transcription start site region 101041	918 bp downstream
Tssr101042	transcription start site region 101042	849 bp downstream
Tssr101043	transcription start site region 101043	830 bp downstream
Tssr101044	transcription start site region 101044	462 bp downstream
Tssr107570	transcription start site region 107570	984 bp upstream