rs217438688 SNP Detail

Summary

• ID
  rs217438688
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96142933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACCAAAA GTCAAATAAA
  ATATATAGAA AATGCTTAGT TGCAGAAGTT TGTAATTGCA AAAAGGCTTC GAATGGAGTA
  GAGAACCCCA GTTGTGCATG TTGATAGGCC ATTTCTACAG GAAACATGAG ACCTACACCA
  GAGACTCTCT GGATGAAAAA TATGGGAGAC ATGTTTGGAT AATTGAAGTG ATATGTTTCA
  S
  TTTGTCTGAA AAAAATCATA AGCTTAGGTT GGTTGCTCAT GGAAAAAAGG GTGATGTTTA
  TTTGCTGGAA AGAGCAGGAA GGAAGATAAT ATGAACATAA TGAAAGCAGT CGTATACTTT
  TTAAAAGTAA ATCAGATTCA TTATGAATAA AGTATAAACA AGTAACACAA AGGGGAATTC
  TGTGTTCTTA TATAATTTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323107376	CHEV_9_96161299	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217438688					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96142933 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	1646 bp downstream
Tssr86594	transcription start site region 86594	1867 bp downstream
Tssr86595	transcription start site region 86595	1619 bp downstream
Tssr86596	transcription start site region 86596	1603 bp downstream