rs217440908 SNP Detail

Summary

• ID
  rs217440908
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115568285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAGGGAT CGCCCGCCGG
  CCCCCGCACC GCCACCCTGC ACCCCTTGCG GCACCCCAAG CCCGGACGCC CCTGCCCGGC
  CCCGCGCCCC GCTGACCCCG GGCGCCCTCG TGCCCTCTTC CGCGCCCCGC CCCGGGGACC
  CCGAGAGCGC AGCACGCTCG GCGAGCGCGC ACGGCCCGGC GCGGGTTGGG GAGCAGTTGT
  G
  GGGGGTGGGG GGCGGGTTGA GGGGGCATCG GGGGGGGCGG GCTGGGCCCC CGGGACCCGC
  CAGCGGCAGC TCCAACTCCG CTCGCACCTG CGGCTCAAAC TTTTGTTGAG GCTGCTCCCG
  GAGCGGCGGG AACCCAACCT GAGCGGTCCC CTACTCCAGC CCGGCCCCGG CCCTTGCCTT
  GCCGAGGCCC CGGTGGGCGC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	WSB/EiJ
ss366356342	MGP_WTSI_5_115880235	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	WSB/EiJ
rs217440908					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366356342	MGP_WTSI_5_115880235	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115568285 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16370	CpG island 16370	within coordinates
Gm43231	predicted gene 43231	751 bp upstream
Msi1	musashi RNA-binding protein 1	within coordinates
Rr618242	regulatory region 618242	733 bp distal
Rr618243	regulatory region 618243	617 bp distal
Rr618244	regulatory region 618244	1334 bp proximal
Tssr48228	transcription start site region 48228	709 bp downstream
Tssr48229	transcription start site region 48229	691 bp downstream
Tssr48230	transcription start site region 48230	658 bp downstream
Tssr48231	transcription start site region 48231	613 bp downstream
Tssr48232	transcription start site region 48232	543 bp downstream
Tssr48233	transcription start site region 48233	519 bp downstream
Tssr48234	transcription start site region 48234	492 bp downstream
Tssr48235	transcription start site region 48235	456 bp downstream
Tssr48236	transcription start site region 48236	234 bp downstream
Tssr48237	transcription start site region 48237	91 bp upstream
Tssr48238	transcription start site region 48238	354 bp upstream
Tssr48239	transcription start site region 48239	1133 bp upstream
Tssr48240	transcription start site region 48240	1781 bp upstream
Tssr48241	transcription start site region 48241	1794 bp upstream
Tssr52797	transcription start site region 52797	717 bp upstream