rs217442478 SNP Detail

Summary

• ID
  rs217442478
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146699074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCTTTCCG TGTTTTATCT TCTTTCTACA
  TCCGTTTTTT TTTTTTTTTT TTCCTTCTGA CACAGTCCTG CTCACCTACT CTAGGGATCT
  CTTAATCTCC CACTTAAGAA AAAAAAAATT AACCATTTAg gcgtatgttg gtggtggtct
  R
  tgctgaagag acagaaatag gaggaccaca ggttcaaggc cagcctggga tacaagccag
  ccagggcagc atagtgagaa cctatctcCA acacacacac acacacacac acacacacac
  acacacacac acacacCTTT ATTTTTCCTA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320546297	CHEV_2_146682890	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217442478					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146699074 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12373	CpG island 12373	880 bp distal
D2Dcr102	DNA Segment, Chr 2, Derry C. Roopenian 102	62 bp proximal
Kiz	kizuna centrosomal protein	within coordinates
Rr397370	regulatory region 397370	472 bp downstream
Rr566738	regulatory region 566738	1280 bp distal
Rr566739	regulatory region 566739	1309 bp distal
Tssr20613	transcription start site region 20613	1329 bp downstream
Tssr20614	transcription start site region 20614	1228 bp downstream