rs217446393 SNP Detail

Summary

• ID
  rs217446393
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101900871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCCCAAA AATAACAGGG
  TCCTTAAGTG AGGTTTGTAA ATCCCCAAAA TAACAGGATC AGATTCAAGT GACTTCAATG
  AAGCTATTAA AAATACGTTC CAAGCCAGGT GTGGTAGCAC GTTTGTAATC TCAGCATTCC
  AGAGGTGGAG GCAGGAGGTT CAGAAGTTCG AGGCCAGCCT GGACTATATA AGACCTTACC
  W
  ACCTTAATAA ATAAAAAGTT CCCGAGTTCA AGGCCAGCCT GGTCTACATT CCAGGACAGC
  CAAGGCTACA CAAAGAAACC TGGTCTAAAA AAAACAAAAC AAACAAACAA ACAAAAAAAC
  AAAAAACAAG CAAACAAACA AACAAAAGCC CAAACAAAAA AAAGAAAAAC CTGAAAAAAA
  ATTGAAAATT AGGCTCAGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353675	CHEV_7_109400178	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217446393					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101900871 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	680 bp distal
Rhog	ras homolog family member G	1546 bp upstream
Rr652562	regulatory region 652562	1587 bp distal
Rr652563	regulatory region 652563	1051 bp distal
Rr652564	regulatory region 652564	722 bp distal
Tssr2354	transcription start site region 2354	1388 bp downstream
Tssr68328	transcription start site region 68328	1971 bp downstream
Tssr68329	transcription start site region 68329	1950 bp downstream
Tssr68330	transcription start site region 68330	1409 bp downstream
Tssr73943	transcription start site region 73943	1578 bp upstream
Tssr73944	transcription start site region 73944	1541 bp upstream
Tssr73945	transcription start site region 73945	1526 bp upstream
Tssr73946	transcription start site region 73946	1330 bp upstream
Tssr73947	transcription start site region 73947	1185 bp upstream
Tssr73948	transcription start site region 73948	1149 bp upstream
Tssr73949	transcription start site region 73949	1116 bp upstream
Tssr73950	transcription start site region 73950	1069 bp upstream