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rs217469198 SNP Detail
Summary
  • ID
    rs217469198
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:67145240 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTACAAGAGA TGGTTACAAA
TGAATGACTC TAAGCTATGA TTAGAGGCGA GTTGGGAAAT GAACCTCTTG GGCTTGGGAA
AGTTTTGTTA CCTCCATAAC CCTCAAGAAT CCCCCATTCT ACAATACCAA AGAAAGCAGT
TCACGAACAT TCTGGAGACA CTCTTTGCAC TCTATGAATA AGGAGGGTCG TATTCTGGTC
Y
ACCTGAGAGA AGAGAGTTCA ATCATTTGTG TTTCCTCTCT CAGGCGAGTT TTCCCGACAG
CTGGATGAAA AAGACGCTAT GGTTTCTCAG CTTTCCCGAG GCAAACAAGC ATTTACACAA
CAGATTGAGG AACTAAAGAG GCAGCTAGAG GAAGAGTCCA AGGTGAGAAC CCTCTGTTGA
GACTTTCATG CATGGAACTG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss383730872 MGP_WTSI_11_67067916 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217469198 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss383730872 MGP_WTSI_11_67067916 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:67145240 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Myh4 myosin, heavy polypeptide 4, skeletal muscle within coordinates
Tssr3528 transcription start site region 3528 319 bp upstream
Tssr3529 transcription start site region 3529 375 bp upstream
Tssr102201 transcription start site region 102201 896 bp downstream
Tssr102202 transcription start site region 102202 407 bp downstream
Tssr102203 transcription start site region 102203 344 bp downstream
Tssr102204 transcription start site region 102204 41 bp upstream
Tssr102205 transcription start site region 102205 259 bp upstream
Tssr102206 transcription start site region 102206 363 bp upstream
Tssr102207 transcription start site region 102207 1007 bp upstream
Tssr102208 transcription start site region 102208 1177 bp upstream
Tssr102209 transcription start site region 102209 1212 bp upstream
Tssr102210 transcription start site region 102210 1230 bp upstream
Tssr102211 transcription start site region 102211 1240 bp upstream
Tssr102212 transcription start site region 102212 1262 bp upstream
Tssr102213 transcription start site region 102213 1414 bp upstream
Tssr102214 transcription start site region 102214 1770 bp upstream
Tssr102215 transcription start site region 102215 1784 bp upstream
Tssr102216 transcription start site region 102216 1828 bp upstream
Tssr102217 transcription start site region 102217 1982 bp upstream
Tssr108534 transcription start site region 108534 1810 bp upstream
Tssr108535 transcription start site region 108535 1704 bp upstream
Tssr108536 transcription start site region 108536 360 bp upstream
Tssr108537 transcription start site region 108537 339 bp upstream
Tssr108538 transcription start site region 108538 144 bp downstream
Tssr108539 transcription start site region 108539 352 bp downstream
Tssr108540 transcription start site region 108540 412 bp downstream
Tssr108541 transcription start site region 108541 1021 bp downstream
Tssr108542 transcription start site region 108542 1182 bp downstream
Tssr108543 transcription start site region 108543 1297 bp downstream
Tssr108544 transcription start site region 108544 1880 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory