rs217470434 SNP Detail

Summary

• ID
  rs217470434
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:147000750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGGC CCTGAGCTGA CTTCCGGGGA
  Y
  GACTTTCTGG GGCAGAACTG CTCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321714919	CHEV_5_147875516	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217470434					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:147000750 () rs orientation: forward

Symbol	Name	Function Class
Lnx2	ligand of numb-protein X 2	within coordinates
Rr378776	regulatory region 378776	1526 bp upstream
Rr399514	regulatory region 399514	339 bp downstream
Tssr54497	transcription start site region 54497	636 bp upstream
Tssr54498	transcription start site region 54498	1850 bp downstream