rs217483742 SNP Detail

Summary

• ID
  rs217483742
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106104428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAAAAAAG TTTTTATTTT TTCATTTCCT TTTTCTGAAC
  AGTAACTCTT AATGTGGTAT CTAAGGCAAA GCGTGTAAAG GGAATCTATT AATTCCCCAA
  M
  CACATCAGGC TTATTTTGTT CTGTTATAGA GCCAAATGTA TGTTTCTCCA GGTTAGCTCT
  GTTTCGATTG AATTTAGGGC AGGTGGCTCG CATGTCTCC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322371906	CHEV_7_113648735	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217483742					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106104428 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr68401	transcription start site region 68401	1583 bp downstream
Tssr74117	transcription start site region 74117	1695 bp upstream
Tssr74118	transcription start site region 74118	1648 bp upstream
Tssr74119	transcription start site region 74119	1250 bp upstream
Tssr74120	transcription start site region 74120	1233 bp upstream
Tssr74121	transcription start site region 74121	1170 bp upstream
Tssr74122	transcription start site region 74122	1153 bp upstream
Tssr74123	transcription start site region 74123	1120 bp upstream
Tssr74124	transcription start site region 74124	1075 bp upstream
Tssr74125	transcription start site region 74125	1064 bp upstream
Tssr74126	transcription start site region 74126	1028 bp upstream
Tssr74127	transcription start site region 74127	877 bp upstream
Tssr74128	transcription start site region 74128	797 bp upstream
Tssr74129	transcription start site region 74129	266 bp upstream
Tssr74130	transcription start site region 74130	217 bp upstream
Tssr74131	transcription start site region 74131	6 bp upstream
Tssr74132	transcription start site region 74132	120 bp downstream
Tssr74133	transcription start site region 74133	819 bp downstream
Tssr74134	transcription start site region 74134	1046 bp downstream
Tssr74135	transcription start site region 74135	1129 bp downstream
Tssr74136	transcription start site region 74136	1197 bp downstream
Tssr74137	transcription start site region 74137	1263 bp downstream
Tssr74138	transcription start site region 74138	1293 bp downstream
Tssr74139	transcription start site region 74139	1327 bp downstream
Tssr74140	transcription start site region 74140	1382 bp downstream
Tssr74141	transcription start site region 74141	1782 bp downstream
Tssr74142	transcription start site region 74142	1925 bp downstream