rs217509574 SNP Detail

Summary

• ID
  rs217509574
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79594283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTCCCCA CAGTGAAAAA
  ACAAAAACAA GAAACAAAAA AATCTGTAGT GCTGTGGTGT ACAAGGTACT TATGTCCAGT
  TAACACTATG TAAACTAAAC AAAGTTATAA TAAAAGTTGT GTTTTTAACA TACATCCATA
  AAGATATCCT TAAGTTTTAC AAATCTCCCC AATTTTACAT TAAAAAAAAA AGTTCTGGGG
  K
  CTGGAGAAGA TATCTTAGAG GATAAGAGCA CACTGGCTGC TCTTCCTGAG GTCCTGAGTA
  CGATTCTCAG CAACCACATG GTGGCTCACA ACCATCTGTA ATGAGATCTG GGGCCACCTT
  CTAAGTCTGT TAGGCATACA TGCAGGCAGA ATGATAAATA CTTACTAGTT ATAGCATGTC
  GGGCAATAAT AGCACAAGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383984637	MGP_WTSI_11_79516959	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217509574					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383984637	MGP_WTSI_11_79516959	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79594283 () rs orientation: forward

Symbol	Name	Function Class
B230207N12Rik	RIKEN cDNA B230207N12 gene	419 bp downstream
Cpgi3370	CpG island 3370	349 bp proximal
Gm11205	predicted gene 11205	1113 bp upstream
Gm74173	predicted gene, 74173	within coordinates
n-TTcgt3	nuclear encoded tRNA threonine 3 (anticodon CGT)	1193 bp upstream
Rr402778	regulatory region 402778	963 bp upstream
Rr452325	regulatory region 452325	within coordinates
Rr452326	regulatory region 452326	196 bp proximal
Rr452327	regulatory region 452327	977 bp proximal
Rr452328	regulatory region 452328	1175 bp proximal
Tssr109524	transcription start site region 109524	1013 bp downstream