rs217509987 SNP Detail

Summary

• ID
  rs217509987
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66056749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGACAAT GTTCACCCTC
  ACATGAAAAC AGAAAGCCCA GGATACCTAA AACAACCCCA AATAACAGAA GAACTACTGG
  AGGGTTCATT ATCCCTAATC TCACGTTGTA TTGCAAGAAC AAAGGTAATT TTTTAAAAAC
  CCACATAATA TTGCCATAAA AACAAATATG TTGGTGAGAG AGCAAACCAC ACAGACCCAC
  A
  CTTGAGTCCA CACACCTATG GACACCATAT AGAGATGCAG ACTGTTAAGG AGGTAGCGTT
  GTTAATCAGT GGTGCTGGTC AGACTGCATG GCTGCATGCA GAAGAGTGCA AATAGATCCA
  TACTTATTAT CTCCCTGCAC AGAACTCAAC TTCACATAGA TGAAAGTCCT CAACACAAAA
  CCAGATACAC TGAGTCTGAT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325658634	CHEV_18_66083332	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217509987					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66056749 () rs orientation: forward

Symbol	Name	Function Class
Gm50118	predicted gene, 50118	1310 bp downstream
Gm50119	predicted gene, 50119	378 bp downstream
Gm58551	predicted gene, 58551	1995 bp upstream
Rr346799	regulatory region 346799	1149 bp distal
Rr346800	regulatory region 346800	652 bp proximal
Rr353052	regulatory region 353052	1348 bp distal
Rr353053	regulatory region 353053	1051 bp proximal
Rr393825	regulatory region 393825	535 bp upstream