rs217510729 SNP Detail

Summary

• ID
  rs217510729
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54801883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAGACCTC TGGCACCATA
  AACATCTAAC TGTGGAGGCC GGAGTCATCT CAGTCTGGGG CCCTTCAGCA GACATGGCTG
  GTGTGGCCTT CATCCCAGAT CTTGGTGGCT CTCAGGAGGC TGCCACAGGT GCAGTGGAGA
  GCATGACAGC ATCAGGCCGT CCCATCATTC TCTTCTGCTC TAGAGACAAA GCCCTCTCCG
  W
  AACTCCTCAC AGAGGGGCAA GGAGCAGGGG GCTCGGGGCA GGTCCTGCTA CTGAGCTTGA
  AGCAAAAACG GCACATGCAC ATGAGTTGGG TATGGTCTCT GGAGAGCCTG GAACCAAGTC
  TTTGAGGTTC TGTGAGAATG GGGTCTTGTT GCACCTCATT CTTAGGATGG AAGCCAGTGG
  CCTCAGCAAC GGATGGCAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383428932	MGP_WTSI_11_54724559	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217510729					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383428932	MGP_WTSI_11_54724559	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54801883 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	670 bp downstream
Tnip1	TNFAIP3 interacting protein 1	within coordinates
Tssr3502	transcription start site region 3502	1413 bp upstream
Tssr3503	transcription start site region 3503	941 bp downstream
Tssr101565	transcription start site region 101565	1990 bp downstream
Tssr101566	transcription start site region 101566	1944 bp downstream
Tssr101567	transcription start site region 101567	1581 bp downstream
Tssr101568	transcription start site region 101568	1507 bp downstream
Tssr101569	transcription start site region 101569	1424 bp downstream
Tssr101570	transcription start site region 101570	1373 bp downstream
Tssr101571	transcription start site region 101571	1297 bp downstream
Tssr101572	transcription start site region 101572	1253 bp downstream
Tssr101573	transcription start site region 101573	1226 bp downstream
Tssr101574	transcription start site region 101574	1201 bp downstream
Tssr101575	transcription start site region 101575	1154 bp downstream
Tssr101576	transcription start site region 101576	1133 bp downstream
Tssr101577	transcription start site region 101577	1111 bp downstream
Tssr101578	transcription start site region 101578	1026 bp downstream
Tssr108010	transcription start site region 108010	1986 bp upstream
Tssr108011	transcription start site region 108011	1370 bp upstream
Tssr108012	transcription start site region 108012	1289 bp upstream
Tssr108013	transcription start site region 108013	1269 bp upstream
Tssr108014	transcription start site region 108014	1254 bp upstream
Tssr108015	transcription start site region 108015	1173 bp upstream
Tssr108016	transcription start site region 108016	1111 bp upstream
Tssr108017	transcription start site region 108017	1070 bp upstream
Tssr108018	transcription start site region 108018	1049 bp upstream
Tssr108019	transcription start site region 108019	980 bp upstream
Tssr108020	transcription start site region 108020	961 bp upstream
Tssr108021	transcription start site region 108021	944 bp upstream
Tssr108022	transcription start site region 108022	901 bp upstream
Tssr108023	transcription start site region 108023	677 bp upstream