rs217519516 SNP Detail

Summary

• ID
  rs217519516
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22182723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATGTGGC CAAGCTTTTT
  TTTTTTTTTT TTTTTTTTTT TTTTTTTTTA TTGTAGGGTT TGTTATCATC AAGTCCTGTG
  GTTGTGGACA TCCTGTAGGA GTGGGAATGC TTAGACTCTG CTGACAGGGA TTTTTGCAGA
  GATCTCCCTT TGGACAAGTG TAGCAGTCTG GTTTCTATGG GAGACAATAG TTTTCTTGCA
  S
  TCTCTCCAGC TTTCTTTTCA GGATTCCTGG GAGAATGACT CTCTTTGTGT CTGAGCTATG
  TGTGAATGAG ACTCACATCT CACATAGTTA AATGAAATCT TTAGATTAAA AGGGACATTT
  TTATTTCTGA TATTTACTCT TTCCTTCACA GTTTCCTTTT TGGAGGCATC ATTCATGAAT
  GTATTTATGT ATTTATTTAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325322954	CHEV_17_22100709	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217519516					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22182723 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8665	CpG island 8665	783 bp distal
Gm7805	predicted gene 7805	394 bp downstream
Rr405064	regulatory region 405064	1039 bp downstream
Rr523003	regulatory region 523003	1302 bp distal
Rr523004	regulatory region 523004	1173 bp distal
Rr523005	regulatory region 523005	238 bp distal
Tssr142901	transcription start site region 142901	990 bp downstream
Tssr142902	transcription start site region 142902	146 bp downstream
Zfp942	zinc finger protein 942	1278 bp upstream
Zfp943	zinc finger prtoein 943	within coordinates