rs217521315 SNP Detail

Summary

• ID
  rs217521315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:59679217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATGACGT TAGAAAAAAA
  GAGAGAAATA AAATAAAATA AAAAGGAGAA ACGGGAAGTA AACTAGTGTT TGTCATGCTC
  CAAATTCACT TCATGCTAGG TATACATGTA GCTCAGGCAG ACCGGATCTT TCTGCCACAG
  GAGCGCCACA CCCTTACCCC AGTTTCAAAG GTGCTGATTT TTTTTTTTTT TTGTAAATTT
  Y
  TCTTTACATA TTTTTAACAT TATAAACTTG ATTTTAAAAA AAAGTTTGCA AAAAAAAAAA
  AGAAAGAAAA ACACATCAAA ATTAACCAAA CCCCAAAACA ATACAACTCA AATGAATACA
  TCTATGCAAT TAAAGTTGAC TTTTGGAAAC GAAATTGTGA AGCTTCACAT TAAATTTAAC
  ACATGTCGAA TATGTTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss391227503	MGP_WTSI_14_60060605	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs217521315					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391227503	MGP_WTSI_14_60060605	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59679217 () rs orientation: forward

Symbol	Name	Function Class
Cab39l	calcium binding protein 39-like	within coordinates
Cpgi6560	CpG island 6560	437 bp distal
Gm45935	predicted gene, 45935	888 bp upstream
Rr404137	regulatory region 404137	710 bp downstream
Rr493049	regulatory region 493049	904 bp distal
Rr493050	regulatory region 493050	777 bp distal
Rr493051	regulatory region 493051	2 bp distal
Setdb2	SET domain, bifurcated 2	888 bp upstream
Tssr125903	transcription start site region 125903	1186 bp downstream
Tssr125904	transcription start site region 125904	772 bp downstream
Tssr129008	transcription start site region 129008	881 bp upstream
Tssr129009	transcription start site region 129009	671 bp upstream
Tssr129010	transcription start site region 129010	660 bp upstream
Tssr129011	transcription start site region 129011	461 bp upstream
Tssr129012	transcription start site region 129012	458 bp upstream
Tssr129013	transcription start site region 129013	451 bp upstream