rs217526357 SNP Detail

Summary

• ID
  rs217526357
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76301073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAAGTCAA GGCAGTGGCT
  CTGATGTATT CCTCTACCAC CAGGCTCCCG AGGACATGGC CAAACTCATT TCTGCACCAG
  GGCAAATGGG GAGGGATGCC AGCCTTGCTG GCATCTAGCT GATGAACAAA GTAGTCTCTG
  CTTCAATACT GATTTGGTCC GCTGAGACCA GAGGATCACT CGTCCTGAAC TCTGCTCCCT
  Y
  CACGCTGATG AAGCCCCACG CTTCTGCTCT GAGGTCCCTC TTAGCTGCTG GGCTGAGCCT
  GCTTTTGGGC TTCAACCCTG GGAGGATAGC AGGTTTTAGT TATGGAAGGC TGGGTTCAGT
  AGTAGCGAAC TTGTCTCTAT GTCAAGGCTG TGGATTGATC GTCCCTGCTG TTACTAGAAT
  TGCGAGCCAG ACCCTGGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104749	CHEV_12_77355286	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217526357					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76301073 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	588 bp proximal
Gm47525	predicted gene, 47525	within coordinates
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	999 bp upstream
Rr403350	regulatory region 403350	746 bp upstream
Rr468112	regulatory region 468112	509 bp proximal
Rr468113	regulatory region 468113	1428 bp proximal
Tssr113934	transcription start site region 113934	910 bp upstream
Tssr113935	transcription start site region 113935	945 bp upstream
Tssr113936	transcription start site region 113936	991 bp upstream
Tssr113937	transcription start site region 113937	1033 bp upstream
Tssr113938	transcription start site region 113938	1049 bp upstream
Tssr113939	transcription start site region 113939	1072 bp upstream
Tssr113940	transcription start site region 113940	1154 bp upstream
Tssr113941	transcription start site region 113941	1184 bp upstream
Tssr116711	transcription start site region 116711	747 bp downstream
Tssr116712	transcription start site region 116712	773 bp downstream