rs217537676 SNP Detail

Summary

• ID
  rs217537676
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:93590371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGGATTA TAAATTCATG
  TGCCACTATG CCTGGCTCTT TCTCTTCTCT TCTCTTCTCT TCTCTTCTCT TCTCTTCTCT
  TCTCTTCTCT TCTCTTCTCT TCTCTTTTTT AAATTTTAAT TTACTCTTTT TTTTTCACAC
  TCCAGATTTT TATCCCCCTC CCGGTCCACC CTCTGACTAT TCCACATCTC ATACCTCCCC
  A
  CCCCCTCTAT GAAGATGTCC CCACCCCAGC CCCCACCTTA CCAGAGCTCT CCACTCTCTG
  GGGCCTCCAG TCTCTTGAGG GTTAGGTGCA TCTCCTTTTT ATTTCCTTTT CCCTTTTTCT
  TTTTATTATT TAAATTATAT CTATGTACAG AAAACTTAGT GTACATTTAA CCCAATGTAG
  TGGCAAGTTC TTTAGCCTTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss404083841	MGP_WTSI_X_91792104	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs217537676					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404083841	MGP_WTSI_X_91792104	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:93590371 () rs orientation: forward

Symbol	Name	Function Class
Gm9005	predicted gene 9005	198 bp downstream
Rr4986	regulatory region 4986	1371 bp distal
Rr4987	regulatory region 4987	1430 bp proximal
Rr7998	regulatory region 7998	332 bp distal
Rr10841	regulatory region 10841	1475 bp proximal